Description

Split a .pairsam file into .pairs and .sam.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

pairs:file

pairsam file

Output

name:type
description
pattern

pairs

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.split.pairs.gz:file

Duplicates removed pairs

*.{pairs.gz}

bam

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.bam:file

Output BAM file

*.bam

versions

versions.yml:file

File containing software versions

versions.yml

Tools

pairtools
MIT

CLI tools to process mapped Hi-C data