Description

Calculate pairs statistics

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

pairs

:file

pairs file

Output

name:type
description
pattern

stats

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.pairs.stat

:file

Pairs statistics

*{.pairs.stat}

versions_pairtools

${task.process}

:string

The name of the process

pairtools

:string

The name of the tool

pairtools --version | sed 's/.*pairtools.*version //'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

pairtools

:string

The name of the tool

pairtools --version | sed 's/.*pairtools.*version //'

:eval

The expression to obtain the version of the tool

Tools

pairtools
MIT

CLI tools to process mapped Hi-C data