modules/pairtools_stats

Calculate pairs statistics

statspairspairsam

https://github.com/nf-core/modules/[...]/modules/nf-core/pairtools/stats

Description

Calculate pairs statistics

Input

Name (Type)

Description

Pattern

`meta` (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

`pairs` (file)

pairs file

Output

Name (Type)

Description

Pattern

`meta` (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

`versions` (file)

File containing software versions

versions.yml

`stat` (file)

stats of the pairs

*.{pairs.stat}

Tools

pairtools
MIT

CLI tools to process mapped Hi-C data

http://pairtools.readthedocs.io https://github.com/mirnylab/pairtools