Description

Calculate pairs statistics

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

pairs{:bash}

:file

pairs file

Output

name:type
description
pattern

stats{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.pairs.stat{:bash}

:file

Pairs statistics

*{.pairs.stat}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

pairtools
MIT

CLI tools to process mapped Hi-C data