Description

Create visualizations from a tsv coverage histogram created with panacus.

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

tsv

:file

TSV coverage histogram created with panacus histgrowth

*.tsv

Output

name:type
description
pattern

image

meta

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.{eps,jpg,jpeg,pdf,pgf,png,ps,raw,rgba,svg,svgz,tif,tiff,webp}

:file

Visualizations created from the coverage histogram

*.{eps,jpg,jpeg,pdf,pgf,png,ps,raw,rgba,svg,svgz,tif,tiff,webp}

versions_panacus

${task.process}

:string

The name of the process

panacus

:string

The name of the tool

panacus --version | sed 's/panacus //'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

panacus

:string

The name of the tool

panacus --version | sed 's/panacus //'

:eval

The expression to obtain the version of the tool

Tools

panacus
MIT

panacus is a tool for computing counting statistics for GFA files