modules/panacus_visualize

Create visualizations from a tsv coverage histogram created with panacus.

statisticspangenomegraphvisualizationtsvgenomics

https://github.com/nf-core/modules/[...]/modules/nf-core/panacus/visualize

Description

Create visualizations from a tsv coverage histogram created with panacus.

Input

name:type

description

pattern

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`tsv{:bash}`
`:file`

TSV coverage histogram created with panacus histgrowth

*.tsv

Output

name:type

description

pattern

`image{:bash}`

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`*.{eps,jpg,jpeg,pdf,pgf,png,ps,raw,rgba,svg,svgz,tif,tiff,webp}{:bash}`
`:file`

Visualizations created from the coverage histogram

*.{eps,jpg,jpeg,pdf,pgf,png,ps,raw,rgba,svg,svgz,tif,tiff,webp}

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

panacus
MIT

panacus is a tool for computing counting statistics for GFA files

github.com/marschall-lab/panacus

modules/panacus_visualize

Description

Input

`meta{:bash}`
`:map`

`tsv{:bash}`
`:file`

Output

`image{:bash}`

`meta{:bash}`
`:map`

`*.{eps,jpg,jpeg,pdf,pgf,png,ps,raw,rgba,svg,svgz,tif,tiff,webp}{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

panacus
MIT

maintainers

get in touch

modules/panacus_visualize

Description

Input

meta{:bash}:map

tsv{:bash}:file

Output

image{:bash}

meta{:bash}:map

*.{eps,jpg,jpeg,pdf,pgf,png,ps,raw,rgba,svg,svgz,tif,tiff,webp}{:bash}:file

versions{:bash}

versions.yml{:bash}:file

Tools

panacus MIT

maintainers

get in touch

`meta{:bash}`
`:map`

`tsv{:bash}`
`:file`

`image{:bash}`

`meta{:bash}`
`:map`

`*.{eps,jpg,jpeg,pdf,pgf,png,ps,raw,rgba,svg,svgz,tif,tiff,webp}{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

panacus
MIT