A fast and scalable tool for bacterial pangenome analysis
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
gff{:bash}
:file
A set of GFF3 formatted files
*.{gff}
results{:bash}
results/*{:bash}
:directory
Directory containing Panaroo result files
*/*
aln{:bash}
results/core_gene_alignment.aln{:bash}
Core-genome alignment produced by Panaroo (Optional)
*.{fasta}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
panaroo - an updated pipeline for pangenome investigation
