A fast and scalable tool for bacterial pangenome analysis
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
gff
:file
A set of GFF3 formatted files
*.{gff}
results
results/*
:directory
Directory containing Panaroo result files
*/*
aln
results/core_gene_alignment.aln
Core-genome alignment produced by Panaroo (Optional)
*.{fasta}
versions
versions.yml
File containing software versions
panaroo - an updated pipeline for pangenome investigation
