A fast and scalable tool for bacterial pangenome analysis
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
gff
:file
A set of GFF3 formatted files
*.{gff}
results
${prefix}/*
:directory
Directory containing Panaroo result files
*/*
aln
${prefix}/core_gene_alignment.aln
Core-genome alignment produced by Panaroo (Optional)
*.{fasta}
versions_panaroo
${task.process}
:string
The name of the process
panaroo
The name of the tool
panaroo --version 2>&1 | sed 's/^.*panaroo //'
:eval
The expression to obtain the version of the tool
versions
panaroo - an updated pipeline for pangenome investigation
