modules/pangolin

Phylogenetic Assignment of Named Global Outbreak LINeages

covidpangolinlineage

https://github.com/nf-core/modules/[...]/modules/nf-core/pangolin

Description

Phylogenetic Assignment of Named Global Outbreak LINeages

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information

`fasta:file`

The genome assembly to be evaluated

Output

name:type

description

pattern

`report`

`meta:map`

Groovy Map containing sample information

`*.csv:file`

Pangolin lineage report

*.{csv}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

pangolin
GPL-3.0-or-later

Phylogenetic Assignment of Named Global Outbreak LINeages

github.com/cov-lineages/pangolin#pangolearn-description

modules/pangolin

Description

Input

`meta:map`

`fasta:file`

Output

`report`

`meta:map`

`*.csv:file`

`versions`

`versions.yml:file`

Tools

pangolin
GPL-3.0-or-later

included in

maintainers

get in touch

modules/pangolin

Description

Input

meta:map

fasta:file

Output

report

meta:map

*.csv:file

versions

versions.yml:file

Tools

pangolin GPL-3.0-or-later

included in

maintainers

get in touch

`meta:map`

`fasta:file`

`report`

`meta:map`

`*.csv:file`

`versions`

`versions.yml:file`

pangolin
GPL-3.0-or-later