Input
Name (Type)
Description
Pattern
bai index corresponding to input bam file. Only necessary if intervals are provided.
*.bai
Table from calculating BQSR. Output from parabricks/fq2bam or gatk4/baserecalibrator.
*.table
File or files containing genomic intervals for use in base quality score recalibration.
*.{bed,interval_list,picard,list,intervals}