Description

NVIDIA Clara Parabricks GPU-accelerated variant calls annotation based on dbSNP database

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test' ]

vcf_file (file)

VCF file undergoing annotation.

*.vcf

dbsnp_file (file)

dbSNP file required for annotation.

*.vcf.gz

tabix_file (file)

dbSNP file index.

*.vcf.gz.tbi

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

ann_vcf (file)

Annotated VCF file

*.vcf

Tools

parabricks
custom

NVIDIA Clara Parabricks GPU-accelerated genomics tools