Description

NVIDIA Clara Parabricks GPU-accelerated variant calls annotation based on dbSNP database

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test' ]

vcf_file{:bash}

:file

VCF file undergoing annotation.

*.vcf

dbsnp_file{:bash}

:file

dbSNP file required for annotation.

*.vcf.gz

tabix_file{:bash}

:file

dbSNP file index.

*.vcf.gz.tbi

Output

name:type
description
pattern

vcf{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.vcf{:bash}

:file

VCF file.

*{.vcf}

compatible_versions{:bash}

compatible_versions.yml{:bash}

:file

File containing info on compatible CPU-based software versions.

compatible_versions.yml

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

parabricks
custom

NVIDIA Clara Parabricks GPU-accelerated genomics tools

nvidia.com/en-us/clara/genomics docs.nvidia.com/clara/parabricks/latest
maintainer
Github user famosab
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