NVIDIA Clara Parabricks GPU-accelerated variant calls annotation based on dbSNP database
meta
:map
Groovy Map containing sample information e.g. [ id:'test' ]
[ id:'test' ]
vcf_file
:file
VCF file undergoing annotation.
*.vcf
dbsnp_file
dbSNP file required for annotation.
*.vcf.gz
tabix_file
dbSNP file index.
*.vcf.gz.tbi
vcf
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
VCF file.
*{.vcf}
compatible_versions
compatible_versions.yml
File containing info on compatible CPU-based software versions.
versions_parabricks
${task.process}
:string
The process the versions were collected from
parabricks
The tool name
pbrun version | grep -m1 '^pbrun:' | sed 's/^pbrun:[[:space:]]*//'
The command used to generate the version of the tool
versions
NVIDIA Clara Parabricks GPU-accelerated genomics tools
