modules/parabricks_deepvariant
NVIDIA Clara Parabricks GPU-accelerated germline variant calling, replicating deepvariant.
variantdeep variantvcfhaplotypecallergermline
Description
NVIDIA Clara Parabricks GPU-accelerated germline variant calling, replicating deepvariant.
Input
Name (Type)
Description
Pattern
Groovy Map containing tumor sample information - id must match read groups for this sample.
[ id:‘test’]
bai index corresponding to input bam file. Only necessary if intervals are provided.
*.bai
file or files containing genomic intervals for use in base quality score recalibration.
*.{bed,interval_list,picard,list,intervals}