Description

NVIDIA Clara Parabricks GPU-accelerated joint genotyping, replicating GATK GenotypeGVCFs

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test' ]

input:file

gvcf file for samples to be jointly genotyped.

*.{g.vcf,g.vcf.gz}

ref_meta:map

Groovy Map containing reference information. [ id:‘test’]

fasta:file

reference fasta - must be unzipped.

*.fasta

Output

name:type
description
pattern

vcf

meta:map

Groovy Map containing sample information e.g. [ id:'test' ]

*.vcf:file

vcf file after gvcf conversion.

*.vcf

versions

versions.yml:file

File containing software versions

versions.yml

Tools

parabricks
custom

NVIDIA Clara Parabricks GPU-accelerated genomics tools

nvidia.com/en-us/clara/genomics docs.nvidia.com/clara/parabricks/4.2.0
maintainers
Github user Furentsu
Github user bsiranosian
get in touch
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