Description

NVIDIA Clara Parabricks GPU-accelerated joint genotyping, replicating GATK GenotypeGVCFs

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test' ]

ref_meta (map)

Groovy Map containing reference information.
[ id:‘test’]

input (file)

gvcf file for samples to be jointly genotyped.

*.{g.vcf,g.vcf.gz}

fasta (file)

reference fasta - must be unzipped.

*.fasta

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test' ]

versions (file)

File containing software versions

versions.yml

vcf (file)

vcf file after gvcf conversion.

*.vcf
maintainers
Github user Furentsu
Github user bsiranosian
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

parabricks
custom

NVIDIA Clara Parabricks GPU-accelerated genomics tools

nvidia.com/en-us/clara/genomics docs.nvidia.com/clara/parabricks/4.2.0