Description

NVIDIA Clara Parabricks GPU-accelerated joint genotyping, replicating GATK GenotypeGVCFs

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test' ]

input:file

gvcf file for samples to be jointly genotyped.

*.{g.vcf,g.vcf.gz}

ref_meta:map

Groovy Map containing reference information. [ id:‘test’]

fasta:file

reference fasta - must be unzipped.

*.fasta

Output

name:type
description
pattern

vcf

meta:map

Groovy Map containing sample information e.g. [ id:'test' ]

*.vcf:file

vcf file after gvcf conversion.

*.vcf

versions

versions.yml:file

File containing software versions

versions.yml

Tools

parabricks
custom

NVIDIA Clara Parabricks GPU-accelerated genomics tools