Description

NVIDIA Clara Parabricks GPU-accelerated gvcf indexing tool.

Input

name:type
description
pattern

meta

:map

Groovy Map containing gvcf information

gvcf

:file

gvcf file to be indexed

*.{vcf,vcf.gz}

Output

name:type
description
pattern

gvcf_index

meta

:map

Groovy Map containing output information

*.{idx,tbi}

:file

Index of the gvcf file

*.{idx,tbi}

compatible_versions

compatible_versions.yml

:file

File containing info on compatible CPU-based software versions.

compatible_versions.yml

versions_parabricks

${task.process}

:string

The process the versions were collected from

parabricks

:string

The tool name

pbrun version | grep -m1 '^pbrun:' | sed 's/^pbrun:[[:space:]]*//'

:string

The command used to generate the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The process the versions were collected from

parabricks

:string

The tool name

pbrun version | grep -m1 '^pbrun:' | sed 's/^pbrun:[[:space:]]*//'

:string

The command used to generate the version of the tool

Tools

parabricks
custom

NVIDIA Clara Parabricks GPU-accelerated genomics tools