modules/paraclu

Paraclu finds clusters in data attached to sequences.

sortclusterbed

https://github.com/nf-core/modules/[...]/modules/nf-core/paraclu

Description

Paraclu finds clusters in data attached to sequences.

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`bed`
`:file`

BED file

*.bed

`min_cluster`
`:integer`

Minimum size of cluster

*.bed

Output

name:type

description

pattern

`bed`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.bed`
`:file`

clustered BED file

*.bed

`versions`

`versions.yml`
`:file`

File containing software versions

versions.yml

Tools

paraclu
GPL v3-or-later

Paraclu finds clusters in data attached to sequences.

gitlab.com/mcfrith/paraclu

modules/paraclu

Description

Input

`meta`
`:map`

`bed`
`:file`

`min_cluster`
`:integer`

Output

`bed`

`meta`
`:map`

`*.bed`
`:file`

`versions`

`versions.yml`
`:file`

Tools

paraclu
GPL v3-or-later

maintainer

get in touch

modules/paraclu

Description

Input

meta:map

bed:file

min_cluster:integer

Output

bed

meta:map

*.bed:file

versions

versions.yml:file

Tools

paraclu GPL v3-or-later

maintainer

get in touch

`meta`
`:map`

`bed`
`:file`

`min_cluster`
`:integer`

`bed`

`meta`
`:map`

`*.bed`
`:file`

`versions`

`versions.yml`
`:file`

paraclu
GPL v3-or-later