Convert a VCF file to a JSON graph
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
vcf:file
The VCF/BCF file
*.{vcf,bcf}(.gz)?
meta2:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
fasta:file
Reference genome VCF was generated against
*.{fasta,fna,fa}
graph
*.json.gz:file
The created graph in BGZIP format
*.json.gz
versions
versions.yml:file
File containing software versions
versions.yml
Graph realignment tools for structural variants
