Description

Convert a VCF file to a JSON graph

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcf (file)

The VCF/BCF file

*.{vcf,bcf}(.gz)?

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

graph (file)

The created graph in BGZIP format

*.json.gz

Tools

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Apache License 2.0

Graph realignment tools for structural variants