Convert a VCF file to a JSON graph
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf{:bash}
:file
The VCF/BCF file
*.{vcf,bcf}(.gz)?
meta2{:bash}
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
fasta{:bash}
Reference genome VCF was generated against
*.{fasta,fna,fa}
graph{:bash}
*.json.gz{:bash}
The created graph in BGZIP format
*.json.gz
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Graph realignment tools for structural variants
