Convert a VCF file to a JSON graph
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf
:file
The VCF/BCF file
*.{vcf,bcf}(.gz)?
meta2
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
fasta
Reference genome VCF was generated against
*.{fasta,fna,fa}
graph
*.json.gz
The created graph in BGZIP format
versions
versions.yml
File containing software versions
Graph realignment tools for structural variants
