Serogroup Pseudomonas aeruginosa assemblies
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta:file
An assembly in FASTA format
*.{fasta,fasta.gz,fna,fna.gz,fa,fa.gz}
tsv
${prefix}.tsv:file
A tab-delimited file with the predicted serogroup
*.tsv
blast
${prefix}.blastn.tsv:file
A tab-delimited file of all blast hits
*.blastn.tsv
details
${prefix}.details.tsv:file
A tab-delimited file with details for each serogroup
*.details.tsv
versions
versions.yml:file
File containing software versions
versions.yml
A tool for in silico serogrouping of Pseudomonas aeruginosa isolates
