Serogroup Pseudomonas aeruginosa assemblies
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
An assembly in FASTA format
*.{fasta,fasta.gz,fna,fna.gz,fa,fa.gz}
tsv
${prefix}.tsv
A tab-delimited file with the predicted serogroup
*.tsv
blast
${prefix}.blastn.tsv
A tab-delimited file of all blast hits
*.blastn.tsv
details
${prefix}.details.tsv
A tab-delimited file with details for each serogroup
*.details.tsv
versions_pasty
${task.process}
:string
The name of the process
pasty
The name of the tool
pasty --version 2>&1 | sed 's/^.*pasty, version //;'
:eval
The expression to obtain the version of the tool
versions
A tool for in silico serogrouping of Pseudomonas aeruginosa isolates
