Description

The pbbam software package provides components to create, query, & edit PacBio BAM files and associated indices. These components include a core C++ library, bindings for additional languages, and command-line utilities.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

bam:file

BAM files to merge

*.bam

Output

name:type
description
pattern

bam

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.bam:file

The merged bam file

*.bam

pbi

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.pbi:file

BAM Pacbio index file

*.bam.pbi

versions

versions.yml:file

File containing software versions

versions.yml