Description

The pbbam software package provides components to create, query, & edit PacBio BAM files and associated indices. These components include a core C++ library, bindings for additional languages, and command-line utilities.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

BAM files to merge

*.bam

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

bam (file)

The merged bam file

*.bam

pbi (file)

BAM Pacbio index file

*.bam.pbi
author
Github user sguizard
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Tools

pbbam
BSD-3-Clause-Clear

PacBio BAM C++ library

github.com/PacificBiosciences/pbbioconda pbbam.readthedocs.io/en/latest/tools/pbmerge https://github.com/pacificbiosciences/pbbam/