modules/pbbam_pbmerge

The pbbam software package provides components to create, query, & edit PacBio BAM files and associated indices. These components include a core C++ library, bindings for additional languages, and command-line utilities.

pbbampbmergebam

https://github.com/nf-core/modules/[...]/modules/nf-core/pbbam/pbmerge

Description

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`bam:file`

BAM files to merge

*.bam

Output

name:type

description

pattern

`bam`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.bam:file`

The merged bam file

*.bam

`pbi`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.pbi:file`

BAM Pacbio index file

*.bam.pbi

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

pbbam
BSD-3-Clause-Clear

PacBio BAM C++ library

github.com/PacificBiosciences/pbbioconda pbbam.readthedocs.io/en/latest/tools/pbmerge https://github.com/pacificbiosciences/pbbam/

modules/pbbam_pbmerge

Description

Input

meta:map

bam:file

Output

bam

meta:map

*.bam:file

pbi

meta:map

*.pbi:file

versions

versions.yml:file

Tools

pbbam BSD-3-Clause-Clear

`meta:map`

`bam:file`

`bam`

`meta:map`

`*.bam:file`

`pbi`

`meta:map`

`*.pbi:file`

`versions`

`versions.yml:file`

pbbam
BSD-3-Clause-Clear