Pacbio ccs - Generate Highly Accurate Single-Molecule Consensus Reads
meta{:bash}
:map
Groovy Map containing sample information id: id of the split file
bam{:bash}
:file
Raw subreads bam
*.subreads.bam
pbi{:bash}
Pacbio BAM Index
*.pbi
chunk_num{:bash}
:integer
BAM part to process
chunk_on{:bash}
Total number of bam parts to process
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
*.chunk*.bam{:bash}
CCS sequences in bam format
*.bam
*.chunk*.bam.pbi{:bash}
PacBio Index of CCS sequences
report_txt{:bash}
*.report.txt{:bash}
CCS report in text format
*.report.txt
report_json{:bash}
*.report.json{:bash}
CCS report in JSON format
*.report.json
metrics{:bash}
*.metrics.json.gz{:bash}
Metrics about zmws
*.json.gz
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
pbccs - Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
