Pacbio ccs - Generate Higly Accurate Single-Molecule Consensus Reads
meta:map
Groovy Map containing sample information id: id of the split file
bam:file
Raw subreads bam
*.subreads.bam
pbi:file
Pacbio BAM Index
*.pbi
chunk_num:integer
BAM part to process
chunk_on:integer
Total number of bam parts to process
bam
Groovy Map containing sample information e.g. [ id:‘test’, single_end
*.chunk*.bam:file
CCS sequences in bam format
*.bam
pbi
*.chunk*.bam.pbi:file
PacBio Index of CCS sequences
report_txt
*.report.txt" :file
Summary of CCS in txt format
.txt
report_json
*.report.json" :file
Summary of CCS in txt json
.json
metrics
*.metrics.json.gz:file
Metrics about zmws
*.json.gz
versions
versions.yml:file
File containing software versions
versions.yml
pbccs - Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
