Assign PBP type of Streptococcus pneumoniae assemblies
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta
An assembly in FASTA format
*.{fasta,fasta.gz,fna,fna.gz,fa,fa.gz}
db
A reference PBP database (optional)
*.{fasta,fna,fa}
versions
File containing software versions
versions.yml
tsv
A tab-delimited file with the predicted PBP type
*.tsv
blast
A tab-delimited file of all blast hits
*.tblastn.tsv
In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies
