Assign PBP type of Streptococcus pneumoniae assemblies
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
An assembly in FASTA format
*.{fasta,fasta.gz,fna,fna.gz,fa,fa.gz}
db{:bash}
A reference PBP database (optional)
*.{fasta,fna,fa}
tsv{:bash}
${prefix}.tsv{:bash}
A tab-delimited file with the predicted PBP type
*.tsv
blast{:bash}
*.tblastn.tsv{:bash}
A tab-delimited file of all blast hits
*.tblastn.tsv
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies
