PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
reads:file
List of input FastQ files with paired-end reads forward and reverse.
assembled
*.assembled.fastq.gz:file
FastQ file containing Assembled reads.
*.{fastq.gz}
unassembled
*.unassembled.forward.fastq.gz:file
FastQ files containing Unassembled forward and reverse reads.
*.unassembled.reverse.fastq.gz:file
discarded
*.discarded.fastq.gz:file
FastQ file containing discarded reads.
versions
versions.yml:file
File containing software versions
versions.yml
paired-end read merger
