Description

PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

reads (file)

List of input FastQ files with paired-end reads forward and reverse.

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

versions (file)

File containing software versions

versions.yml

assembled (file)

FastQ file containing Assembled reads.

*.{fastq.gz}

unassembled (file)

FastQ files containing Unassembled forward and reverse reads.

*.{fastq.gz}

discarded (file)

FastQ file containing discarded reads.

*.{fastq.gz}

Tools

pear
Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported

paired-end read merger