PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
reads{:bash}
:file
List of input FastQ files with paired-end reads forward and reverse.
assembled{:bash}
*.assembled.fastq.gz{:bash}
FastQ file containing Assembled reads.
*.{fastq.gz}
unassembled{:bash}
*.unassembled.forward.fastq.gz{:bash}
FastQ files containing Unassembled forward and reverse reads.
*.unassembled.reverse.fastq.gz{:bash}
discarded{:bash}
*.discarded.fastq.gz{:bash}
FastQ file containing discarded reads.
versions_pear{:bash}
${task.process}{:bash}
:string
The name of the process
pear{:bash}
The name of the tool
pear -h | grep 'PEAR v' | sed 's/PEAR v//' | sed 's/ .*//'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
paired-end read merger
