PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
reads
:file
List of input FastQ files with paired-end reads forward and reverse.
assembled
*.assembled.fastq.gz
FastQ file containing Assembled reads.
*.{fastq.gz}
unassembled
*.unassembled.forward.fastq.gz
FastQ files containing Unassembled forward and reverse reads.
*.unassembled.reverse.fastq.gz
discarded
*.discarded.fastq.gz
FastQ file containing discarded reads.
versions_pear
${task.process}
:string
The name of the process
pear
The name of the tool
pear -h | grep 'PEAR v' | sed 's/PEAR v//' | sed 's/ .*//'
:eval
The expression to obtain the version of the tool
versions
paired-end read merger
