PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
reads{:bash}
:file
List of input FastQ files with paired-end reads forward and reverse.
assembled{:bash}
*.assembled.fastq.gz{:bash}
FastQ file containing Assembled reads.
*.{fastq.gz}
unassembled{:bash}
*.unassembled.forward.fastq.gz{:bash}
FastQ files containing Unassembled forward and reverse reads.
*.unassembled.reverse.fastq.gz{:bash}
discarded{:bash}
*.discarded.fastq.gz{:bash}
FastQ file containing discarded reads.
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
paired-end read merger
