Manipulation, validation and exploration of pedigrees
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf:file
VCF file
*.{vcf.gz}
vcf_tbi:file
TBI file
*.{vcf.gz.tbi}
ped:file
PED/FAM file
*.{ped,fam}
html
*.html:file
HTML file
*.{html}
csv
*.csv:file
CSV file
*.{csv}
ped
*.peddy.ped:file
*.peddy.{ped}
png
*.png:file
PNG file
*.{png}
versions
versions.yml:file
File containing software versions
versions.yml
genotype, ped correspondence check, ancestry check, sex check. directly, quickly on VCF
