Runs PEKA CLIP peak k-mer analysis
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
peaks
BED file of peak regions
*.{bed,bed.gz}
crosslinks
BED file of crosslinks
fasta
Genome reference sequence used
*.{fa,fasta}
fai
FAI file corresponding to the reference sequence
*.{fai}
gtf
A segmented GTF used to annotate peaks
*.{gtf}
cluster
TSV file of summed occurrence distributions of k-mers within defined clusters
*.tsv
distribution
TSV file with calculated PEKA score and occurrence distribution for all possible k-mers
pdf
PDF file with graphs showing k-mer occurrence distributions around thresholded crosslink sites
*.pdf
versions
File containing software versions
versions.yml
Positionally-enriched k-mer analysis (PEKA) is a software package for identifying enriched protein-RNA binding motifs from CLIP datasets
