modules/phispy
Predict prophages in bacterial genomes
genomicsvirusphageprophageannotationidentification
Output
Name (Type)
Description
Pattern
Coordinates of each prophage identified in the genome,
and their att sites (if found).
*.{tsv} A duplicate GenBank record that is the same as the input record,
but we have inserted the prophage information, including att
sites into the record.
*.{gbk,gbff} File containing all the genes of the genome, one per line.
The tenth column describes how likely the gene is a phage gene.
*.{tsv} A file containing simpler version of the coordinates file,
with only prophage number, contig, start and stop.
*.{tsv} maintainer
