Description

Collect metrics about the insert size distribution of a paired-end library.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

BAM/CRAM/SAM file

*.{bam,cram,sam}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

pdf (file)

Histogram plots of the insert size metrics computed by Picard

*.pdf

metrics (file)

Values used by Picard to generate the insert size histograms

*.txt
author
Github user FerriolCalvet
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

picard
MIT

Java tools for working with NGS data in the BAM format

broadinstitute.github.io/picard https://github.com/broadinstitute/picard