Description

Collect metrics about the insert size distribution of a paired-end library.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

bam:file

BAM/CRAM/SAM file

*.{bam,cram,sam}

Output

name:type
description
pattern

metrics

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.txt:file

Values used by Picard to generate the insert size histograms

*.txt

histogram

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.pdf:file

Insert size histogram in PDF format

*.pdf

versions

versions.yml:file

File containing software versions

versions.yml

Tools

picard
MIT

Java tools for working with NGS data in the BAM format