Collect metrics about the insert size distribution of a paired-end library.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
BAM/CRAM/SAM file
*.{bam,cram,sam}
metrics{:bash}
*.txt{:bash}
Values used by Picard to generate the insert size histograms
*.txt
histogram{:bash}
*.pdf{:bash}
Insert size histogram in PDF format
*.pdf
versions_picard{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
picard{:bash}
The tool name
picard CollectInsertSizeMetrics --version 2>&1 | sed -n 's/.*Version://p'{:bash}
The command used to generate the version of the tool
versions{:bash}
Java tools for working with NGS data in the BAM format
