Description

Creates a sequence dictionary for a reference sequence.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fasta:file

The reference fasta file

*.fasta

Output

name:type
description
pattern

reference_dict

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.dict:file

picard dictionary file

*.{dict}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

picard
MIT

Creates a sequence dictionary file (with ".dict" extension) from a reference sequence provided in FASTA format, which is required by many processing and analysis tools. The output file contains a header but no SAMRecords, and the header contains only sequence records.

broadinstitute.github.io/picard gatk.broadinstitute.org/hc/en-us/articles/360036712531-CreateSequenceDictionary-Picard- https://github.com/broadinstitute/picard
included in
createpanelrefs pathogensurveillance variantbenchmarking
maintainers
Github user sateeshperi
Github user mjcipriano
Github user hseabolt
get in touch
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