Creates a sequence dictionary for a reference sequence.
Input
name:type
description
pattern
meta
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
fasta
:file
The reference fasta file
*.fasta
Output
name:type
description
pattern
reference_dict
meta
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
*.dict
:file
picard dictionary file
*.{dict}
versions_picard
${task.process}
:string
The process the versions were collected from
picard
:string
The tool name
picard CreateSequenceDictionary --version 2>&1 | sed -n 's/.*Version://p'
:string
The command used to generate the version of the tool
Topics
name:type
description
pattern
versions
${task.process}
:string
The process the versions were collected from
picard
:string
The tool name
picard CreateSequenceDictionary --version 2>&1 | sed -n 's/.*Version://p'
:string
The command used to generate the version of the tool
Tools
picard
MIT
Creates a sequence dictionary file (with ".dict" extension) from a reference sequence provided in FASTA format, which is required by many processing and analysis tools. The output file contains a header but no SAMRecords, and the header contains only sequence records.
