Description

Creates a sequence dictionary for a reference sequence.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

The reference fasta file

*.fasta

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

dict (file)

picard dictionary file

*.{dict}
included in
createpanelrefs pathogensurveillance
authors
Github user sateeshperi Github user mjcipriano Github user hseabolt
get in touch
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Tools

picard
MIT

Creates a sequence dictionary file (with ".dict" extension) from a reference sequence provided in FASTA format, which is required by many processing and analysis tools. The output file contains a header but no SAMRecords, and the header contains only sequence records.

broadinstitute.github.io/picard gatk.broadinstitute.org/hc/en-us/articles/360036712531-CreateSequenceDictionary-Picard- https://github.com/broadinstitute/picard