Description

Creates a sequence dictionary for a reference sequence.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fasta{:bash}

:file

The reference fasta file

*.fasta

Output

name:type
description
pattern

reference_dict{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.dict{:bash}

:file

picard dictionary file

*.{dict}

versions_picard{:bash}

${task.process}{:bash}

:string

The process the versions were collected from

picard{:bash}

:string

The tool name

picard CreateSequenceDictionary --version 2>&1 | sed -n 's/.*Version://p'{:bash}

:string

The command used to generate the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The process the versions were collected from

picard{:bash}

:string

The tool name

picard CreateSequenceDictionary --version 2>&1 | sed -n 's/.*Version://p'{:bash}

:string

The command used to generate the version of the tool

Tools

picard
MIT

Creates a sequence dictionary file (with ".dict" extension) from a reference sequence provided in FASTA format, which is required by many processing and analysis tools. The output file contains a header but no SAMRecords, and the header contains only sequence records.

broadinstitute.github.io/picard gatk.broadinstitute.org/hc/en-us/articles/360036712531-CreateSequenceDictionary-Picard- https://github.com/broadinstitute/picard
included in
methylseqpathogensurveillanceseqinspectorvariantbenchmarking
maintainers
Github user sateeshperi
Github user mjcipriano
Github user hseabolt
get in touch
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