modules/picard_createsequencedictionary

Creates a sequence dictionary for a reference sequence.

sequencedictionarypicard

https://github.com/nf-core/modules/[...]/modules/nf-core/picard/createsequencedictionary

Description

Creates a sequence dictionary for a reference sequence.

Input

name:type

description

pattern

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`fasta{:bash}`
`:file`

The reference fasta file

*.fasta

Output

name:type

description

pattern

`reference_dict{:bash}`

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.dict{:bash}`
`:file`

picard dictionary file

*.{dict}

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

picard
MIT

Creates a sequence dictionary file (with ".dict" extension) from a reference sequence provided in FASTA format, which is required by many processing and analysis tools. The output file contains a header but no SAMRecords, and the header contains only sequence records.

broadinstitute.github.io/picard gatk.broadinstitute.org/hc/en-us/articles/360036712531-CreateSequenceDictionary-Picard- https://github.com/broadinstitute/picard

modules/picard_createsequencedictionary

Description

Input

`meta{:bash}`
`:map`

`fasta{:bash}`
`:file`

Output

`reference_dict{:bash}`

`meta{:bash}`
`:map`

`*.dict{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

picard
MIT

included in

maintainers

get in touch

modules/picard_createsequencedictionary

Description

Input

meta{:bash}:map

fasta{:bash}:file

Output

reference_dict{:bash}

meta{:bash}:map

*.dict{:bash}:file

versions{:bash}

versions.yml{:bash}:file

Tools

picard MIT

included in

maintainers

get in touch

`meta{:bash}`
`:map`

`fasta{:bash}`
`:file`

`reference_dict{:bash}`

`meta{:bash}`
`:map`

`*.dict{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

picard
MIT