Converts a FASTQ file to an unaligned BAM or SAM file.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
bam
*.bam
Unaligned bam file
*.{bam}
versions_picard
${task.process}
:string
The process the versions were collected from
picard
The tool name
picard FastqToSam --version 2>&1 | sed -n 's/.*Version://p'
The command used to generate the version of the tool
versions
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
