Converts a FASTQ file to an unaligned BAM or SAM file.
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
versions
File containing software versions
versions.yml
bam
Unaligned bam file
*.{bam}
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
