Lifts over a VCF file from one reference build to another.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
input_vcf:file
VCF file
*.{vcf,vcf.gz}
meta2:map
Groovy Map containing reference information e.g. [ id:‘genome’ ]
dict:file
dictionary for fasta file
*.{dict}
meta3:map
fasta:file
fasta file
*.fasta
meta4:map
chain:file
The liftover chain file
vcf_lifted
*.lifted.vcf.gz:file
VCF file containing successfully lifted variants
*.{lifted.vcf.gz}
vcf_unlifted
*.unlifted.vcf.gz:file
VCF file containing unsuccessfully lifted variants
*.{unlifted.vcf.gz}
versions
versions.yml:file
File containing software versions
versions.yml
Move annotations from one assembly to another
