Merges multiple BAM files into a single file
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bams
:list
List of input BAM files to be merged
*.{bam}
bam
*.bam
:file
Merged BAM file
versions_picard
${task.process}
:string
The process the versions were collected from
picard
The tool name
picard MergeSamFiles --version 2>&1 | sed -n 's/.*Version://p'
The command used to generate the version of the tool
versions
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
