Sorts BAM/SAM files based on a variety of picard specific criteria
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam
BAM/CRAM/SAM file
*.{bam,sam}
sort_order
Picard sort order type
unsorted|queryname|coordinate|duplicate|unknown
versions
File containing software versions
versions.yml
Sorted BAM/CRAM/SAM file
*.{bam}
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
