Sorts vcf files
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
vcf
VCF file
*.{vcf,vcf.gz}
meta2
Groovy Map containing reference information e.g. [ id:‘genome’ ]
fasta
Reference genome fasta file
*.{fasta,fa}
meta3
dict
Reference genome dictionary file
*.{dict}
versions
File containing software versions
versions.yml
Sorted VCF file
*.{vcf}
Java tools for working with NGS data in the BAM/CRAM/SAM and VCF format