Sorts vcf files
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf:file
VCF file
*.{vcf,vcf.gz}
meta2:map
Groovy Map containing reference information e.g. [ id:‘genome’ ]
fasta:file
Reference genome fasta file
*.{fasta,fa}
meta3:map
dict:file
Reference genome dictionary file
*.{dict}
vcf
*_sorted.vcf.gz:file
Sorted VCF file
*.{vcf}
versions
versions.yml:file
File containing software versions
versions.yml
Java tools for working with NGS data in the BAM/CRAM/SAM and VCF format
