Compresses files with pigz.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
raw_file{:bash}
:file
File to be compressed
*.*
archive{:bash}
$archive{:bash}
The compressed file
*.gz
versions_pigz{:bash}
${task.process}{:bash}
:string
The name of the process
pigz{:bash}
The name of the tool
pigz --version 2>&1 | sed "s/^.*pigz[[:space:]]*//"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Parallel implementation of the gzip algorithm.
