modules/pilon
Automatically improve draft assemblies and find variation among strains, including large event detection
polishingassemblyvariant calling
Description
Automatically improve draft assemblies and find variation among strains, including large event detection
Input
name:type
description
pattern
Indicates the type of bam file used (frags for paired-end sequencing of DNA fragments, such as Illumina paired-end reads of fragment size <1000bp, jumps for paired sequencing data of larger insert size, such as Illumina mate pair libraries, typically of insert size >1000bp, unpaired for unpaired sequencing reads, bam will automatically classify the BAM as one of the three types above (version 1.17 and higher).