modules/pindel_pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data
deletionsinsertionstandem duplications
Description
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data
Input
Name (Type)
Description
Pattern
Groovy Map containing sample information, insert_size is either determined using Picard/CollectInsertSizeMetrics
or a sensible default - setting ext.args2 to either in modules.conf
e.g. [ id:‘test’, single_end
maintainer
