Main caller script for peak calling
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bams
:file
One or more BAM files
*.{bam}
bais
Corresponding BAM file indexes
*.bam.bai
assay_type
:string
Assay type
divergent_TREs
*_divergent_peaks.bed
Divergent TREs
bidirectional_TREs
*_bidirectional_peaks.bed
Divergent TREs and convergent TREs
unidirectional_TREs
*_unidirectional_peaks.bed
Unidirectional TREs, maybe lncRNAs transcribed from enhancers (e-lncRNAs)
peakcalling_log
peakcalling_*.log
Peakcalling log for debugging purposes
versions
versions.yml
File containing software versions
Peak Identifier for Nascent Transcripts Starts (PINTS)
