Description

Main caller script for peak calling

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bams (file)

BAM/ file

*.{bam}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

divergent_TREs (file)

Divergent TREs

*_divergent_peaks.bed

bidirectional_TREs (file)

Divergent TREs and convergent TREs

*_bidirectional_peaks.bed

unidirectional_TREs (file)

Unidirectional TREs, maybe lncRNAs transcribed from enhancers (e-lncRNAs)

*_unidirectional_peaks.bed

peakcalling_log (file)

Peakcalling log for debugging purposes

peakcalling_*.log
included in
nascent
author
Github user Emiller88
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