Main caller script for peak calling
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bams:file
One or more BAM files
*.{bam}
bais:file
Corresponding BAM file indexes
*.bam.bai
assay_type:string
Assay type
divergent_TREs
*_divergent_peaks.bed:file
Divergent TREs
*_divergent_peaks.bed
bidirectional_TREs
*_bidirectional_peaks.bed:file
Divergent TREs and convergent TREs
*_bidirectional_peaks.bed
unidirectional_TREs
*_unidirectional_peaks.bed:file
Unidirectional TREs, maybe lncRNAs transcribed from enhancers (e-lncRNAs)
*_unidirectional_peaks.bed
peakcalling_log
peakcalling_*.log:file
Peakcalling log for debugging purposes
peakcalling_*.log
versions
versions.yml:file
File containing software versions
versions.yml
Peak Identifier for Nascent Transcripts Starts (PINTS)
