Pangenome toolbox for bacterial genomes
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
gff
A set of GFF3 formatted files
*.{gff}
versions
File containing software versions
versions.yml
results
Directory containing PIRATE result files
*/*
aln
Core-genome alignment produced by PIRATE (Optional)
*.{fasta}
Pangenome analysis and threshold evaluation toolbox
