Pangenome toolbox for bacterial genomes
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
gff:file
A set of GFF3 formatted files
*.{gff}
results
results/*:directory
Directory containing PIRATE result files
*/*
aln
results/core_alignment.fasta:file
Core-genome alignment produced by PIRATE (Optional)
*.{fasta}
versions
versions.yml:file
File containing software versions
versions.yml
Pangenome analysis and threshold evaluation toolbox
