Pangenome toolbox for bacterial genomes
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
gff{:bash}
:file
A set of GFF3 formatted files
*.{gff}
results{:bash}
${prefix}_results/*{:bash}
:directory
Directory containing PIRATE result files
*/*
aln{:bash}
${prefix}_results/core_alignment.fasta{:bash}
Core-genome alignment produced by PIRATE (Optional)
*.{fasta}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Pangenome analysis and threshold evaluation toolbox
