Identify plasmids in bacterial sequences and assemblies
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
seqs
Input FASTA or FASTQ formatted genome sequences
*.{fastq.gz,fq.gz,fastq.gz,fna.gz,fa.gz}
versions
File containing software versions
versions.yml
json
The results from analysis in JSON format
*.json
txt
The summary of results from analysis
*.txt
tsv
The results from analysis in TSV format
*.tsv
genome_seq
FASTA of sequences in the input with a hit
*-hit_in_genome_seq.fsa
plasmid_seq
FASTA of plasmid sequences with a hit against the input
*-plasmid_seqs.fsa
PlasmidFinder allows identification of plasmids in total or partial sequenced isolates of bacteria.
