assembles bacterial plasmids
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
scaffold
Fasta file containing scaffold
fasta
FASTA reference file
*.{fasta,fa}
html
html file with results rendered
*.{html}
tab
Results in a tabular file
*.{tab}
images
Directory containing the images produced by plasmidid
logs
Directory containing the logs produced by plasmidid
data
Directory containing the data produced by plasmidid
database
Directory containing the database produced by plasmidid
fasta_files
Directory containing the fasta files produced by plasmidid
kmer
Directory containing the kmer files produced by plasmidid
versions
File containing software versions
versions.yml
Pipeline for plasmid identification and reconstruction
