Subset plink pfiles with a text file of variant identifiers
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
pgen:file
PLINK 2 binary genotype table
*.{pgen}
psam:file
PLINK 2 sample information file
*.{psam}
pvar:file
PLINK 2 variant information file
*.{pvar}
variants:file
A text file containing variant identifiers to keep (one per line)
*.{keep}
extract_pgen
*.pgen:file
PLINK 2 binary genotype table, containing extracted variants
extract_psam
*.psam:file
PLINK 2 sample information file associated with the extracted data
extract_pvar
*.pvar.zst:file
PLINK 2 variant information file, containing extracted variants
*.{pvar.zst}
versions
versions.yml:file
File containing software versions
versions.yml
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner
