Apply a scoring system to each sample in a plink 2 fileset
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
pgen
:file
PLINK 2 binary genotype table
*.{pgen}
psam
PLINK 2 sample information file
*.{psam}
pvar
PLINK 2 variant information file
*.{pvar}
scorefile
A text file containing variant identifiers and weights
*.{scores,txt,scorefile}
score
*.sscore
A text file containing sample scores, in plink 2 .sscore format
*.{sscore}
versions_plink2
${task.process}
:string
The name of the process
plink2
The name of the tool
plink2 --version 2>&1 | sed 's/^PLINK v//; s/ 64.*\$//'
:eval
The expression to obtain the version of the tool
versions
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner
