Import variant genetic data using plink2
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
vcf
Variant calling file (vcf)
*.{vcf}, *.{vcf.gz}
versions
File containing software versions
versions.yml
pgen
PLINK 2 binary genotype table
*.{pgen}
psam
PLINK 2 sample information file
*.{psam}
pvar
PLINK 2 variant information file
*.{pvar.zst}
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner
