Import variant genetic data using plink2
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf
:file
Variant calling file (vcf)
*.{vcf}, *.{vcf.gz}
pgen
*.pgen
PLINK 2 binary genotype table
*.{pgen}
psam
*.psam
PLINK 2 sample information file
*.{psam}
pvar
*.pvar
PLINK 2 variant information file
*.{pvar.zst}
pvar_zst
*.pvar.zst
PLINK 2 variant information zst file
versions
versions.yml
File containing software versions
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner
