Import variant genetic data using plink2
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
vcf:file
Variant calling file (vcf)
*.{vcf}, *.{vcf.gz}
pgen
*.pgen:file
PLINK 2 binary genotype table
*.{pgen}
psam
*.psam:file
PLINK 2 sample information file
*.{psam}
pvar
*.pvar:file
PLINK 2 variant information file
*.{pvar.zst}
pvar_zst
*.pvar.zst:file
PLINK 2 variant information zst file
*.pvar.zst
versions
versions.yml:file
File containing software versions
versions.yml
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner
