Import variant genetic data using plink2
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf{:bash}
:file
Variant calling file (vcf)
*.{vcf}, *.{vcf.gz}
pgen{:bash}
*.pgen{:bash}
PLINK 2 binary genotype table
*.{pgen}
psam{:bash}
*.psam{:bash}
PLINK 2 sample information file
*.{psam}
pvar{:bash}
*.pvar{:bash}
PLINK 2 variant information file
*.{pvar.zst}
pvar_zst{:bash}
*.pvar.zst{:bash}
PLINK 2 variant information zst file
*.pvar.zst
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner
