Exclude variant identifiers from plink bfiles
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed
:file
PLINK binary biallelic genotype table
*.{bed}
bim
PLINK extended MAP file
*.{bim}
fam
PLINK sample information file
*.{fam}
variants
A text file containing variant identifiers to remove (one per line)
*.{txt}
*.bed
PLINK binary biallelic genotype table file
*.bim
*.fam
versions_plink
${task.process}
:string
The name of the process
plink
The name of the tool
plink --version 2>&1 | sed 's/^PLINK v//;s/ .*//'
:eval
The expression to obtain the version of the tool
versions
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
