Subset plink bfiles with a text file of variant identifiers
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed{:bash}
:file
PLINK binary biallelic genotype table
*.{bed}
bim{:bash}
PLINK extended MAP file
*.{bim}
fam{:bash}
PLINK sample information file
*.{fam}
variants{:bash}
A text file containing variant identifiers to keep (one per line)
*.{keep}
*.bed{:bash}
*.bim{:bash}
*.fam{:bash}
versions_plink{:bash}
${task.process}{:bash}
:string
The name of the process
plink{:bash}
The name of the tool
plink --version 2>&1 | sed 's/^PLINK v//;s/ .*//'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
