Generate Hardy-Weinberg statistics for provided input
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bed:file
PLINK binary biallelic genotype table file
*.{bed}
bim:file
PLINK extended MAP file
*.{bim}
fam:file
PLINK sample information file
*.{fam}
meta2:map
vcf:file
VCF format input file
*.{vcf} | *{vcf.gz}
meta3:map
bcf:file
BCF format input file
*.{bcf}
hwe
*.hwe:file
Summary file containing observed vs expected heterozygous frequencies and the p-value of the hardy-weinberg statistics
versions
versions.yml:file
File containing software versions
versions.yml
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
