modules/plink_recode
Recodes plink bfiles into a new text fileset applying different modifiers
recodebfilesplinkwhole genome association
Output
Name (Type)
Description
Pattern
PLINK/MERLIN/Haploview text pedigree + genotype table file. Produced by the default “—recode” or by “—recode 12”.
*.{ped}
PLINK text fileset variant information file. Produced by the default “—recode” or by “—recode 12”.
*.{map}
Text file. Produced by “—recode 23”. Can only be used in a file with only one sample.
*.{txt}
Single BEAGLE unphased genotype file. Produced by “—recode beagle” in ‘beagle-nomap’ mode.
*.{beagle.dat}
BEAGLE unphased genotype and variant information files. Produced by “—recode beagle”.
*.{*.chr-*.dat}