Analyses variant calling files using plink
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf:file
Variant calling file (vcf)
*.{vcf}
bed
*.bed:file
PLINK binary biallelic genotype table
*.{bed}
bim
*.bim:file
PLINK extended MAP file
*.{bim}
fam
*.fam:file
PLINK sample information file
*.{fam}
versions
versions.yml:file
File containing software versions
versions.yml
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner
