pmdtools command to filter ancient DNA molecules from others
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
BAM file
*.bam
bai
BAM index file
*.bai
threshold
:float
Post-mortem damage score threshold
reference
FASTA file
*.{fa,fasta}
Filtered BAM file
versions
versions.yml
File containing software versions
Compute postmortem damage patterns and decontaminate ancient genomes
