pmdtools command to filter ancient DNA molecules from others
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
BAM file
*.bam
bai{:bash}
BAM index file
*.bai
threshold{:bash}
:float
Post-mortem damage score threshold
reference{:bash}
FASTA file
*.{fa,fasta}
*.bam{:bash}
Filtered BAM file
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Compute postmortem damage patterns and decontaminate ancient genomes
