pmdtools command to filter ancient DNA molecules from others
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam:file
BAM file
*.bam
bai:file
BAM index file
*.bai
threshold:float
Post-mortem damage score threshold
reference:file
FASTA file
*.{fa,fasta}
bam
*.bam:file
Filtered BAM file
versions
versions.yml:file
File containing software versions
versions.yml
Compute postmortem damage patterns and decontaminate ancient genomes
