pmdtools command to filter ancient DNA molecules from others
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam
BAM file
*.bam
bai
BAM index file
*.bai
threshold
Post-mortem damage score threshold
reference
FASTA file
*.{fa,fasta}
versions
File containing software versions
versions.yml
Filtered BAM file
Compute postmortem damage patterns and decontaminate ancient genomes
